Datasets

To retrieve a dataset (e.g. cell_cycle) use:

import pyVIA.datasets_via as datasets_via
adata = datasets_via.cell_cycle()

cell_cycle([foldername])	Load cell cycle data as AnnData object
cell_cycle_cyto_data([foldername])	Load cell cycle imagine based flow-cyto features AnnData object with n_obs × n_vars = 2036 × 38 obs: 'cell_cycle_phase' :param foldername (string) Default current directory.
embryoid_body([foldername])	Load embryoid body data as AnnData object
scATAC_hematopoiesis([foldername])	Load scATAC seq Hematopoiesis data as AnnData object
scRNA_hematopoiesis([foldername])	Load scRNA seq Hematopoiesis data as AnnData object
toy_disconnected([foldername])	Load Toy_Disconnected data as AnnData object
toy_multifurcating([foldername])	Load Toy_Multifurcating data as AnnData object