pyVIA.plotting_via.via_forcelayout

pyVIA.plotting_via.via_forcelayout(X_pca, viagraph_full=None, k=10, n_milestones=2000, time_series_labels=[], knn_seq=5, saveto='', random_seed=0)

Compute force directed layout. #TODO not complete

Parameters:

• X_pca –

• viagraph_full (csr_matrix) – optional. if calling before via, then None. if calling after or from within via, then we can use the via-graph to reinforce the layout

• k (int) –

• random_seed (int) –

• t_diffusion –

• n_milestones –

• time_series_labels (list) –

• knn_seq (int) –

Return type:

ndarray

Returns:

ndarray