pyVIA.plotting_via.plot_gene_trend_heatmaps

pyVIA.plotting_via.plot_gene_trend_heatmaps(via_object, df_gene_exp, marker_lineages=[], fontsize=8, cmap='viridis', normalize=True, ytick_labelrotation=0, fig_width=7)[source]

Plot the gene trends on heatmap: a heatmap is generated for each lineage (identified by terminal cluster number). Default selects all lineages

Parameters:

  • via_object –

  • df_gene_exp (DataFrame) – pandas DataFrame single-cell level expression [cells x genes]

  • marker_lineages (list) – list default = None and plots all detected all lineages. Optionally provide a list of integers corresponding to the cluster number of terminal cell fates

  • fontsize (int) – int default = 8

  • cmap (str) – str default = ‘viridis’

  • normalize (bool) – bool = True

  • ytick_labelrotation (int) – int default = 0

Returns:

fig and list of axes