Index A | C | E | F | G | I | L | M | N | P | S | T | U | V | Z A animate_atlas() (in module pyVIA.plotting_via) (in module VIA.plotting_via) animate_atlas_old() (in module VIA.plotting_via) animate_streamplot() (in module pyVIA.plotting_via) (in module VIA.plotting_via) C cell_cycle() (in module VIA.datasets_via), [1] cell_cycle_cyto_data() (in module VIA.datasets_via), [1] cluster_bp (VIA.core.VIA attribute), [1] CSM (VIA.core.VIA attribute), [1] csr_array_locally_pruned (VIA.core.VIA attribute), [1] csr_full_graph (VIA.core.VIA attribute), [1] E embedding (VIA.core.VIA attribute), [1] embryoid_body() (in module VIA.datasets_via), [1] F full_neighbor_array (VIA.core.VIA attribute), [1] G get_gene_expression() (in module pyVIA.plotting_via) (in module VIA.plotting_via) I ig_full_graph (VIA.core.VIA attribute), [1] L labels (VIA.core.VIA attribute), [1] M make_dict_of_clusters_for_each_celltype() (in module VIA.plotting_via) make_edgebundle_milestone() (in module pyVIA.plotting_via) (in module VIA.plotting_via) module VIA.datasets_via VIA.plotting_via moffitt_preoptic() (in module VIA.datasets_via) N n_milestones (VIA.core.VIA attribute), [1] P plot_all_spatial_clusters() (in module VIA.plotting_via) plot_atlas_view() (in module pyVIA.plotting_via) (in module VIA.plotting_via) plot_clusters_spatial() (in module VIA.plotting_via) plot_differentiation_flow() (in module pyVIA.plotting_via) (in module VIA.plotting_via) plot_gene_trend_heatmaps() (in module pyVIA.plotting_via) (in module VIA.plotting_via) plot_piechart_only_viagraph() (in module VIA.plotting_via) plot_piechart_viagraph() (in module pyVIA.plotting_via) (in module VIA.plotting_via) plot_population_composition() (in module pyVIA.plotting_via) (in module VIA.plotting_via) plot_sc_lineage_probability() (in module pyVIA.plotting_via) (in module VIA.plotting_via) plot_scatter() (in module pyVIA.plotting_via) (in module VIA.plotting_via) plot_trajectory_curves() (in module pyVIA.plotting_via) (in module VIA.plotting_via) plot_viagraph() (in module pyVIA.plotting_via) (in module VIA.plotting_via) plot_viagraph_() (in module VIA.plotting_via) S sc_transition_matrix() (VIA.core.VIA method), [1] scATAC_hematopoiesis() (in module VIA.datasets_via), [1] scRNA_hematopoiesis() (in module VIA.datasets_via), [1] single_cell_bp (VIA.core.VIA attribute), [1] single_cell_bp_rownormed (VIA.core.VIA attribute), [1] single_cell_pt_markov (VIA.core.VIA attribute), [1] single_cell_transition_matrix (VIA.core.VIA attribute), [1] T terminal_clusters (VIA.core.VIA attribute), [1], [2], [3] toy_disconnected() (in module VIA.datasets_via), [1] toy_multifurcating() (in module VIA.datasets_via), [1] U user_defined_terminal_cell (VIA.core.VIA attribute), [1] user_defined_terminal_group (VIA.core.VIA attribute), [1] V VIA (class in VIA.core), [1] VIA.datasets_via module VIA.plotting_via module via_atlas_emb() (in module pyVIA.plotting_via) (in module VIA.plotting_via) via_forcelayout() (in module pyVIA.plotting_via) (in module VIA.plotting_via) via_mds() (in module pyVIA.plotting_via) (in module VIA.plotting_via) via_streamplot() (in module pyVIA.plotting_via) (in module VIA.plotting_via) Z zesta() (in module VIA.datasets_via)